Base class for classifiers relying on numerical representations of texts instead of words that use the architecture of Protonets and its corresponding training techniques.
Source:R/obj_TEClassifiersBasedOnProtoNet.R
TEClassifiersBasedOnProtoNet.RdBase class for classifiers relying on EmbeddedText or LargeDataSetForTextEmbeddings as input which use the architecture of Protonets and its corresponding training techniques.
Objects of this class containing fields and methods used in several other classes in 'AI for Education'.
This class is not designed for a direct application and should only be used by developers.
See also
Other R6 Classes for Developers:
AIFEBaseModel,
AIFEMaster,
BaseModelCore,
ClassifiersBasedOnTextEmbeddings,
DataManagerClassifier,
LargeDataSetBase,
ModelsBasedOnTextEmbeddings,
TEClassifiersBasedOnRegular,
TokenizerBase
Super classes
aifeducation::AIFEMaster -> aifeducation::AIFEBaseModel -> aifeducation::ModelsBasedOnTextEmbeddings -> aifeducation::ClassifiersBasedOnTextEmbeddings -> TEClassifiersBasedOnProtoNet
Methods
Inherited methods
aifeducation::AIFEMaster$get_all_fields()aifeducation::AIFEMaster$get_documentation_license()aifeducation::AIFEMaster$get_ml_framework()aifeducation::AIFEMaster$get_model_config()aifeducation::AIFEMaster$get_model_description()aifeducation::AIFEMaster$get_model_info()aifeducation::AIFEMaster$get_model_license()aifeducation::AIFEMaster$get_package_versions()aifeducation::AIFEMaster$get_private()aifeducation::AIFEMaster$get_publication_info()aifeducation::AIFEMaster$get_sustainability_data()aifeducation::AIFEMaster$is_configured()aifeducation::AIFEMaster$is_trained()aifeducation::AIFEMaster$set_documentation_license()aifeducation::AIFEMaster$set_model_description()aifeducation::AIFEMaster$set_model_license()aifeducation::AIFEMaster$set_publication_info()aifeducation::AIFEBaseModel$count_parameter()aifeducation::ModelsBasedOnTextEmbeddings$get_text_embedding_model()aifeducation::ModelsBasedOnTextEmbeddings$get_text_embedding_model_name()aifeducation::ClassifiersBasedOnTextEmbeddings$adjust_target_levels()aifeducation::ClassifiersBasedOnTextEmbeddings$check_embedding_model()aifeducation::ClassifiersBasedOnTextEmbeddings$check_feature_extractor_object_type()aifeducation::ClassifiersBasedOnTextEmbeddings$load_from_disk()aifeducation::ClassifiersBasedOnTextEmbeddings$plot_coding_stream()aifeducation::ClassifiersBasedOnTextEmbeddings$plot_training_history()aifeducation::ClassifiersBasedOnTextEmbeddings$predict()aifeducation::ClassifiersBasedOnTextEmbeddings$requires_compression()aifeducation::ClassifiersBasedOnTextEmbeddings$save()
Method train()
Method for training a neural net.
Training includes a routine for early stopping. In the case that loss<0.0001 and Accuracy=1.00 and Average Iota=1.00 training stops. The history uses the values of the last trained epoch for the remaining epochs.
After training the model with the best values for Average Iota, Accuracy, and Loss on the validation data set is used as the final model.
Usage
TEClassifiersBasedOnProtoNet$train(
data_embeddings = NULL,
data_targets = NULL,
data_folds = 5L,
data_val_size = 0.25,
loss_pt_fct_name = "MultiWayContrastiveLoss",
use_sc = FALSE,
sc_method = "knnor",
sc_min_k = 1L,
sc_max_k = 10L,
use_pl = FALSE,
pl_max_steps = 3L,
pl_max = 1,
pl_anchor = 1,
pl_min = 0,
sustain_track = TRUE,
sustain_iso_code = NULL,
sustain_region = NULL,
sustain_interval = 15L,
sustain_log_level = "warning",
epochs = 40L,
batch_size = 35L,
Ns = 5L,
Nq = 3L,
loss_alpha = 0.5,
loss_margin = 0.05,
sampling_separate = FALSE,
sampling_shuffle = TRUE,
trace = TRUE,
ml_trace = 1L,
log_dir = NULL,
log_write_interval = 10L,
n_cores = auto_n_cores(),
lr_rate = 0.001,
lr_warm_up_ratio = 0.02,
optimizer = "AdamW"
)Arguments
data_embeddingsEmbeddedText, LargeDataSetForTextEmbeddingsObject of class EmbeddedText or LargeDataSetForTextEmbeddings.data_targetsfactorcontaining the labels for cases stored in embeddings. Factor must be named and has to use the same names as used in in the embeddings. .data_foldsintdetermining the number of cross-fold samples. Allowed values:1 <= xdata_val_sizedoublebetween 0 and 1, indicating the proportion of cases which should be used for the validation sample during the estimation of the model. The remaining cases are part of the training data. Allowed values:0 < x < 1loss_pt_fct_namestringName of the loss function to use during training. Allowed values: 'MultiWayContrastiveLoss'use_scboolTRUEif the estimation should integrate synthetic cases.FALSEif not.sc_methodstringcontaining the method for generating synthetic cases. Allowed values: 'knnor'sc_min_kintdetermining the minimal number of k which is used for creating synthetic units. Allowed values:1 <= xsc_max_kintdetermining the maximal number of k which is used for creating synthetic units. Allowed values:1 <= xuse_plboolTRUEif the estimation should integrate pseudo-labeling.FALSEif not.pl_max_stepsintdetermining the maximum number of steps during pseudo-labeling. Allowed values:1 <= xpl_maxdoublesetting the maximal level of confidence for considering a case for pseudo-labeling. Allowed values:0 < x <= 1pl_anchordoubleindicating the reference point for sorting the new cases of every label. Allowed values:0 <= x <= 1pl_mindoublesetting the mnimal level of confidence for considering a case for pseudo-labeling. Allowed values:0 <= x < 1sustain_trackboolIfTRUEenergy consumption is tracked during training via the python library 'codecarbon'.sustain_iso_codestringISO code (Alpha-3-Code) for the country. This variable must be set if sustainability should be tracked. A list can be found on Wikipedia: https://en.wikipedia.org/wiki/List_of_ISO_3166_country_codes. Allowed values: anysustain_regionstringRegion within a country. Only available for USA and Canada See the documentation of codecarbon for more information. https://mlco2.github.io/codecarbon/parameters.html Allowed values: anysustain_intervalintInterval in seconds for measuring power usage. Allowed values:1 <= xsustain_log_levelepochsintNumber of training epochs. Allowed values:1 <= xbatch_sizeintSize of the batches for training. Allowed values:1 <= xNsintNumber of cases for every class in the sample. Allowed values:1 <= xNqintNumber of cases for every class in the query. Allowed values:1 <= xloss_alphadoubleValue between 0 and 1 indicating how strong the loss should focus on pulling cases to its corresponding prototypes or pushing cases away from other prototypes. The higher the value the more the loss concentrates on pulling cases to its corresponding prototypes. Allowed values:0 <= x <= 1loss_margindoubleValue greater 0 indicating the minimal distance of every case from prototypes of other classes. Please note that in contrast to the orginal work by Zhang et al. (2019) this implementation reaches better performance if the margin is a magnitude lower (e.g. 0.05 instead of 0.5). Allowed values:0 <= x <= 1sampling_separateboolIfTRUEthe cases for every class are divided into a data set for sample and for query. These are never mixed. IfTRUEsample and query cases are drawn from the same data pool. That is, a case can be part of sample in one epoch and in another epoch it can be part of query. It is ensured that a case is never part of sample and query at the same time. In addition, it is ensured that every cases exists only once during a training step.sampling_shuffleboolifTRUEcases a randomly drawn from the data during every step. IfFALSEthe cases are not shuffled.traceboolTRUEif information about the estimation phase should be printed to the console.ml_traceintml_trace=0does not print any information about the training process from pytorch on the console. Allowed values:0 <= x <= 1log_dirstringPath to the directory where the log files should be saved. If no logging is desired set this argument toNULL. Allowed values: anylog_write_intervalintTime in seconds determining the interval in which the logger should try to update the log files. Only relevant iflog_diris notNULL. Allowed values:1 <= xn_coresintNumber of cores which should be used during the calculation of synthetic cases. Only relevant ifuse_sc=TRUE. Allowed values:1 <= xlr_ratedoubleInitial learning rate for the training. Allowed values:0 < x <= 1lr_warm_up_ratiodoubleNumber of epochs used for warm up. Allowed values:0 < x < 0.5optimizerstringdetermining the optimizer used for training. Allowed values: 'Adam', 'RMSprop', 'AdamW', 'SGD'loss_balance_class_weightsboolIfTRUEclass weights are generated based on the frequencies of the training data with the method Inverse Class Frequency. IfFALSEeach class has the weight 1.loss_balance_sequence_lengthboolIfTRUEsample weights are generated for the length of sequences based on the frequencies of the training data with the method Inverse Class Frequency. IfFALSEeach sequences length has the weight 1.
Details
sc_max_k: All values from sc_min_k up to sc_max_k are successively used. If the number ofsc_max_kis too high, the value is reduced to a number that allows the calculating of synthetic units.pl_anchor:With the help of this value, the new cases are sorted. For this aim, the distance from the anchor is calculated and all cases are arranged into an ascending order.
Method predict_with_samples()
Method for predicting the class of given data (query) based on provided examples (sample).
Usage
TEClassifiersBasedOnProtoNet$predict_with_samples(
newdata,
batch_size = 32L,
ml_trace = 1L,
embeddings_s = NULL,
classes_s = NULL
)Arguments
newdataObject of class EmbeddedText or LargeDataSetForTextEmbeddings containing the text embeddings for all cases which should be predicted. They form the query set.
batch_sizeintbatch size.ml_traceintml_trace=0does not print any information about the training process from pytorch on the console. Allowed values:0 <= x <= 1embeddings_sObject of class EmbeddedText or LargeDataSetForTextEmbeddings containing the text embeddings for all reference examples. They form the sample set.
classes_sNamed
factorcontaining the classes for every case withinembeddings_s.
Method embed()
Method for embedding documents. Please do not confuse this type of embeddings with the embeddings of texts created by an object of class TextEmbeddingModel. These embeddings embed documents according to their similarity to specific classes.
Usage
TEClassifiersBasedOnProtoNet$embed(
embeddings_q = NULL,
embeddings_s = NULL,
classes_s = NULL,
batch_size = 32L,
ml_trace = 1L
)Arguments
embeddings_qObject of class EmbeddedText or LargeDataSetForTextEmbeddings containing the text embeddings for all cases which should be embedded into the classification space.
embeddings_sObject of class EmbeddedText or LargeDataSetForTextEmbeddings containing the text embeddings for all reference examples. They form the sample set. If set to
NULLthe trained prototypes are used.classes_sNamed
factorcontaining the classes for every case withinembeddings_s. If set toNULLthe trained prototypes are used.batch_sizeintbatch size.ml_traceintml_trace=0does not print any information about the training process from pytorch on the console. Allowed values:0 <= x <= 1
Returns
Returns a list containing the following elements
embeddings_q: embeddings for the cases (query sample).distances_q:matrixcontaining the distance of every query case to every prototype.embeddings_prototypes: embeddings of the prototypes which were learned during training. They represents the center for the different classes.
Method plot_embeddings()
Method for creating a plot to visualize embeddings and their corresponding centers (prototypes).
Usage
TEClassifiersBasedOnProtoNet$plot_embeddings(
embeddings_q,
classes_q = NULL,
embeddings_s = NULL,
classes_s = NULL,
batch_size = 12L,
alpha = 0.5,
size_points = 3L,
size_points_prototypes = 8L,
inc_unlabeled = TRUE,
inc_margin = TRUE
)Arguments
embeddings_qObject of class EmbeddedText or LargeDataSetForTextEmbeddings containing the text embeddings for all cases which should be embedded into the classification space.
classes_qNamed
factorcontaing the true classes for every case. Please note that the names must match the names/ids inembeddings_q.embeddings_sObject of class EmbeddedText or LargeDataSetForTextEmbeddings containing the text embeddings for all reference examples. They form the sample set. If set to
NULLthe trained prototypes are used.classes_sNamed
factorcontaining the classes for every case withinembeddings_s. If set toNULLthe trained prototypes are used.batch_sizeintbatch size.alphafloatValue indicating how transparent the points should be (important if many points overlap). Does not apply to points representing prototypes.size_pointsintSize of the points excluding the points for prototypes.size_points_prototypesintSize of points representing prototypes.inc_unlabeledboolIfTRUEplot includes unlabeled cases as data points.inc_marginboolIfTRUEplot includes the margin around every prototype. Adding margin requires a trained model. If the model is not trained this argument is treated as set toFALSE.